PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07050.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 208aa MW: 21738.4 Da PI: 10.5718

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07050.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.2	7.3e-35	54	162	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasn 84 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss ++ Zmw_sc07050.1.g00030.1.sm.mk 54 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapSTSSSSSHYQQ 134 89*******************************************************999994443222211111111111 PP TCP 85 sssg..........................k 89 + + Zmw_sc07050.1.g00030.1.sm.mk 135 ---SvlgkrpreegdatvaaasafwaalpsA 162 ...1334445555555555555555554442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.1E-31	52	138	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MPTRDVSTAA AAMFHVYQPA QIPSTAAPAT AATDGTVAVP TSTQGKKKSA QGGKDRHSKV 60 NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSILAATGS GTTPAVFVSS 120 SAPSTSSSSS HYQQSVLGKR PREEGDATVA AASAFWAALP SAAPRTEAWG FSPLEAQAAT 180 YVPMAQAHHL NLLAALSGAA RRAEEETR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452500.1	1e-84	transcription factor TCP7
Swissprot	Q9FMX2	7e-40	TCP7_ARATH; Transcription factor TCP7
TrEMBL	C5XY73	3e-83	C5XY73_SORBI; Uncharacterized protein
STRING	Sb04g026970.1	5e-84	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100