PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07059.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 142aa    MW: 15990.3 Da    PI: 10.5126
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07059.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA572.7e-182660135
                            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                    C+ C+ttkTplWR gp g+ +LCnaCG++yrkk++
  Zmw_sc07059.1.g00030.1.sm.mkhc 26 CTECHTTKTPLWRGGPCGPMSLCNACGIRYRKKRR 60
                                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.28E-141859No hitNo description
PROSITE profilePS5011412.4792056IPR000679Zinc finger, GATA-type
SMARTSM004014.2E-152084IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-142460IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.48E-142560No hitNo description
PfamPF003204.6E-162660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDSSVEKGSG SLDPDERPAA GEPKACTECH TTKTPLWRGG PCGPMSLCNA CGIRYRKKRR  60
EALGLDSSKS NADQQQQQRK KKTKREKERE EEGEVTVQLR SVGFGKEVVL KQRRRMRRRR  120
RLGEEERAAI LLMALSSGVV YA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17784QRKKKTKR
27885RKKKTKRE
3111117QRRRMRR
4113118RRMRRR
5113120RRMRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.12e-64GATA transcription factor 16
TrEMBLA0A1E5US092e-63A0A1E5US09_9POAL; Uncharacterized protein
STRINGPavir.J03766.1.p6e-70(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892