PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07248.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 81aa MW: 9072.39 Da PI: 9.6837

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07248.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	28	81	3	52
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52 k ++t+eq+e+Le+l+ +++ps ++r++L +++ +++ +q+kvWFqNrR Zmw_sc07248.1.g00060.1.am.mk 28 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRR 81 5679*************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-16	10	81	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.544	23	81	IPR001356	Homeobox domain
SMART	SM00389	9.4E-5	25	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-15	27	81	IPR009057	Homeodomain-like
CDD	cd00086	3.15E-13	28	81	No hit	No description
Pfam	PF00046	6.0E-16	28	81	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MAAAVAMRGG SSDSGGGFDK GPGMDSGKYV RYTPEQVEVL ERLYIDCPKP SSSRRQQLLR 60 ECPILANIEP KQIKVWFQNR R

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269\|PubMed:17804793}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795001.1	3e-46	homeobox-leucine zipper protein HOX10
Refseq	XP_025795002.1	3e-46	homeobox-leucine zipper protein HOX10
Refseq	XP_025795003.1	3e-46	homeobox-leucine zipper protein HOX10
Refseq	XP_025795004.1	3e-46	homeobox-leucine zipper protein HOX10
Swissprot	A2XBL9	3e-43	HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
Swissprot	Q6TAQ6	3e-43	HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10
TrEMBL	A0A1D6JKR7	1e-46	A0A1D6JKR7_MAIZE; Rolled leaf2
TrEMBL	B4FK18	4e-48	B4FK18_MAIZE; Uncharacterized protein
STRING	Pavir.Ia04841.1.p	2e-46	(Panicum virgatum)
STRING	Sb01g050000.1	3e-45	(Sorghum bicolor)
STRING	GRMZM2G042250_P03	4e-45	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18491	5	8

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825]