PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07264.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 683aa    MW: 73826.1 Da    PI: 9.28
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07264.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-09452475226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   ktelC+ + + G C+y  rC+FaHg
  Zmw_sc07264.1.g00010.1.am.mk 452 KTELCNKWEQ-GVCPYARRCRFAHG 475
                                   9*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-5450476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-7450481IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-14450482IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638450477IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-6452475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-9483514IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.04E-6484513IPR000571Zinc finger, CCCH-type
SMARTSM003560.29487514IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765487515IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
FSRGPRPPVS SKSPVARLAI SGDRVQDHTK LACTATGPPH ACSEVDPRPA LPPPAPLSFS  60
LAHFPPVHSH LRKLQRQGIY LLSRSGVRHF SPLNLPRLLL SSAAPLDLDR LREFSGALRN  120
SHLKDALNLF SRMVNSGLVP DGFSFSSVLS ACARSGARQY GLDGDSRVTA ASSSSSSSCR  180
VKTMERKLEA VSPPRPPRVS SRSDGRGFAS PTRASPPETP MDSPLSCVSH DRGRGSGSVI  240
SLPTAAPSLE TQLKSPSSCV SDSRSGVSVT GSVFSSPTWA SPHPNSPSPC VSDSRGGRCS  300
SSLRVSKERE REVMEAESLL CEITERYNDC FLRLRDATAE LVDLRHEHVH LRAENLQLSL  360
LLAELETEQS KHASVVALNP PPKPVQAEAA FGCAPRSISI RSKGFLPQQQ PRDDSKPQRL  420
RVRASLAAEE APEKETEDEQ VEVEAYGQGA LKTELCNKWE QGVCPYARRC RFAHGVQELR  480
PVIRHPRYKT LPCQMFIAPT GCPYGHRCHF RHSPAPTAYS SNPNPSGGDR GWESDLPPPG  540
GVVPSVGYEI VRHSCFFASD LAAPVVIVKM NQGSRGHGLM GCGTGRTFPR PNRFRGRRGF  600
GCSDHGVSGE KAPADGGPNV EVGGSHGGRA VVEQGDEKWM PKKDLYQEPK MKEWRVKSAS  660
SFGNGGSTSQ NPQNFQQLFS SGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-16452513567Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ10MN82e-93C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235