PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07315.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 77aa    MW: 8646.18 Da    PI: 10.811
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07315.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.8e-261059250
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                                  rien++ rqvtfskRr g++KKA+EL +LCdaev +++fss tg+lye+ 
  Zmw_sc07315.1.g00020.1.am.mk 10 RIENTTSRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSStTGRLYEFT 59
                                  9***********************************9998637******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.118162IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-35161IPR002100Transcription factor, MADS-box
CDDcd002651.91E-34263No hitNo description
SuperFamilySSF554551.02E-26262IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-22323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-261058IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MGRGKIVIQR IENTTSRQVT FSKRRSGLFK KAKELAILCD AEVGLVVFSS TTGRLYEFTN  60
TRFVLLVSSC FLAKLDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-16161160MEF2C
5f28_B5e-16161160MEF2C
5f28_C5e-16161160MEF2C
5f28_D5e-16161160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820847.19e-32MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP492e-28MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2T7D7K25e-31A0A2T7D7K2_9POAL; Uncharacterized protein
STRINGGRMZM2G044408_P012e-30(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]