PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07319.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 894aa    MW: 95401 Da    PI: 8.2015
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07319.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05279301123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++Cgk Fs+   L  H+r+H
  Zmw_sc07319.1.g00010.1.am.mk 279 HKCKKCGKEFSSGQALGGHMRKH 301
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.24E-7231301No hitNo description
PROSITE profilePS501579.66233260IPR007087Zinc finger, C2H2
SMARTSM003550.5233255IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-5233257IPR007087Zinc finger, C2H2
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4278302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0026279301IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-10279303IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.321279306IPR007087Zinc finger, C2H2
PROSITE patternPS000280281301IPR007087Zinc finger, C2H2
SuperFamilySSF484031.54E-17768847IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.8E-18768847IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.545775847IPR020683Ankyrin repeat-containing domain
SMARTSM002481500776804IPR002110Ankyrin repeat
PfamPF127968.9E-9778839IPR020683Ankyrin repeat-containing domain
CDDcd002044.31E-17781847No hitNo description
SMARTSM002486.6E-8808837IPR002110Ankyrin repeat
PROSITE profilePS5008815.227808840IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MASSPNRRRR RADGDSGGLE EGEIVPSSST TSESSDAKND DNSDSLPSPP PPFYYPPEEN  60
TATGQAAMLP LPTPSSGRES DDTISDDGSS GRAANSGMGA GCSRGCDAES RGKGKAIASS  120
SSSDEQNHSV PAVVSGLNHP LEPMPLAFAT ADLLSSFDIA SVRPNFYVGE SSTSRQSTCN  180
EPAVAGPSDK ALVHQQPAAM QQKDQELDLE LRLAPPGPPE QAAPGPAAPP REYRCEICGR  240
SYLKYQQLGG HKTKHLDRGK KFEDGNANPT AACQDTQKHK CKKCGKEFSS GQALGGHMRK  300
HYEGEPIVVV RKSKKQCVEQ PAQPGPGVVP PTSLAHLAAV CVAELTLCLG LRIQTGQAPC  360
PSPPAPAVQE GSYIRPREGA PEVQEGTDKG PHVDAPAVQE GGSATTENSA AIGGQQRQDE  420
GADKSINPPA DPPSKLLLGP TNMSCPPGRP IAPRWAEQTR NPLAGLRQHL NSRPLASPQG  480
TGYSPAPFTL HRRAAPPGVR KEACQYVTLP HLQSADFTAR SLGNPSWKSC THQAIPEIRD  540
MQSLLLPNIH VRVWSTKLPC EKATSSLKWH PQPDGDVRAD LRVDLRRVDR LPSQSVLEAA  600
RPSSPGNLAF HPSLFSARLL FSRLFPSHHS PDPDTAAKGT SPGLSGAHSR ASGTPIGTRD  660
SVRPGCPPDQ SHTPIKKPPG RRSIGVRGTG FGPSEMAATG MKIALHRQVS GGSMKHAAEL  720
RRQASMESPR AGRATSRFLF GRQSSMDPNR RRGRSQSPVR RCAEDAELTV PDNLDTTMQL  780
LFFACQGDAA GVEALLGAGV DVNSINLDGR TALHVAACEG HRDVVRVLLK RKANIDARDR  840
WGSTVSHADN CSPISHQMMI WKFPFVFPLV LIVNQSVFPT LLVEKQEDAD DGID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298314RKHYEGEPIVVVRKSKK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1852459