PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07348.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 630aa    MW: 69296 Da    PI: 10.5432
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07348.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.18.1e-264305322101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...XTTSE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...kekiw 79 
                                   Fl k++e++ed++++ ++sw +  nsfvv+d++ fa ++Lp+ Fkh nf+ F+RQLn+Y  ++++ +         + + w
  Zmw_sc07348.1.g00020.1.am.mk 430 FLAKTFELVEDPATDGVVSWGAARNSFVVWDPHAFAARLLPRRFKHANFSTFLRQLNTYVRNRMRITLLLFGFrkvSADKW 510
                                   9********************999***********************************888887765432223335999* PP

                                   EEEESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  80 eFkhksFkkgkkellekikrkk 101
                                   eF+h  F +g+++ll +i+r++
  Zmw_sc07348.1.g00020.1.am.mk 511 EFAHADFLAGQRHLLANIRRRR 532
                                   ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF130412.9E-14136184IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.937137171IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.4E-9139173IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.649172206IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.9E-8174204IPR002885Pentatricopeptide repeat
PfamPF130414.1E-15207254IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.832207240IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.3E-9208241IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.219241275IPR002885Pentatricopeptide repeat
SMARTSM004151.5E-42426531IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-30427531IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-27427531IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-10430453IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-25430531IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-10468480IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-10481493IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
LRHSSLIASG SSAPSKLFLP TTSASLTPSL PRPMSVSPPT SRPAAAPAYS RSPPASSRSS  60
LASATGPTSP PRSWTSSTKR CSLSGHTCSA LPSILETLLY VLANHDLLDA AVHALAHPAI  120
TVVGLSGNSS TYCLPPNAFT FNIMIDFLCK EGELMEARAM FERMTETCCS PDVVTFNSLI  180
DGYGKCRELE EVEKLVGEMK RSGIALVVTF NAMISCFCKF GRMEKAYNYF GEMKRKRVTA  240
NVVTFISFID AFCKEDLVRE AMKLLARMGV RGETEDVRSV PGEQREAPHE GQGGRSRHAP  300
ELPSTTRRSR ARRRRRRHST PPWRCTELMS IKSNGHARRE HQRMNLSPAH VSRQAIKPPT  360
YATQRTRRAA PGATAFFCSM EKPAAATVKQ EQHDDGEVVV LDGDGEGWPR GKAPAPLEAL  420
SSVAPAVAPF LAKTFELVED PATDGVVSWG AARNSFVVWD PHAFAARLLP RRFKHANFST  480
FLRQLNTYVR NRMRITLLLF GFRKVSADKW EFAHADFLAG QRHLLANIRR RRGAAGSSTS  540
PSSGESGSGH GIGEVERLRR DREALARELA RLQREQQEAR AALLDMERRV RGTERRQEQC  600
TAFLARAVAN PGFLDGLLAR RDAAAAEGGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ozs_A3e-281362771173Alpha solenoid protein
5i9d_A9e-2813427735413pentatricopeptide repeat protein dPPR-U8A2
5i9h_A1e-2713427735413pentatricopeptide repeat protein dPPR-U8G2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307316RSRARRRRRR
2556561RLRRDR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231