PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07415.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 99aa MW: 11254.8 Da PI: 5.1679

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07415.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.3	2.4e-26	6	98	1	87
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75 +ppG+rF Pt+eel+++yL++k++g + ++e+vi+ +++y+v+Pw+L++ ++e + w+fF++r++ +a+g r++ Zmw_sc07415.1.g00010.1.sm.mkhc 6 VPPGYRFYPTEEELICFYLRNKLDGLRGDIERVIPVFEVYTVDPWQLKEiherlcGGAGEGEPWFFFCPRQEGEARGGRPS 86 69**************************99***********8545655422236779************** PP NAM 76 ratksgyWkatg 87 r+t +gyWka g Zmw_sc07415.1.g00010.1.sm.mkhc 87 RVTPTGYWKAAG 98 ********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-29	3	98	IPR003441	NAC domain
PROSITE profile	PS51005	30.507	6	99	IPR003441	NAC domain
Pfam	PF02365	2.0E-15	7	96	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MAANGVPPGY RFYPTEEELI CFYLRNKLDG LRGDIERVIP VFEVYTVDPW QLKEIHERLC 60 GGAGEGEPWF FFCPRQEGEA RGGRPSRVTP TGYWKAAGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-16	5	99	16	103	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-16	5	99	16	103	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-16	5	99	16	103	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-16	5	99	16	103	NO APICAL MERISTEM PROTEIN
3swm_A	2e-16	5	99	19	106	NAC domain-containing protein 19
3swm_B	2e-16	5	99	19	106	NAC domain-containing protein 19
3swm_C	2e-16	5	99	19	106	NAC domain-containing protein 19
3swm_D	2e-16	5	99	19	106	NAC domain-containing protein 19
3swp_A	2e-16	5	99	19	106	NAC domain-containing protein 19
3swp_B	2e-16	5	99	19	106	NAC domain-containing protein 19
3swp_C	2e-16	5	99	19	106	NAC domain-containing protein 19
3swp_D	2e-16	5	99	19	106	NAC domain-containing protein 19
4dul_A	2e-16	5	99	16	103	NAC domain-containing protein 19
4dul_B	2e-16	5	99	16	103	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818071.1	2e-55	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	6e-31	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1E5URX2	3e-55	A0A1E5URX2_9POAL; NAC domain-containing protein 90
STRING	Pavir.J02276.1.p	6e-57	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]