PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07464.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 540aa MW: 58708.9 Da PI: 8.987

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07464.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	67	4.2e-21	272	331	2	61
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61 Fl+k+++++++++l+ +isw + gns+vv+d+++fa++vLp +Fkh+nf+ FvRQLn+Y Zmw_sc07464.1.g00010.1.am.mk 272 FLSKTFDLVSEPALDGVISWGAAGNSIVVWDPSTFARDVLPYHFKHNNFSTFVRQLNTYS 331 9**********************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-22	266	331	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.7E-25	268	373	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.03E-20	268	331	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.9E-18	272	331	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-10	272	295	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-10	310	322	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-10	323	335	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MFTAADATFA TPTKGTEPVR HKTATTTITL GYADVAQRTI QPIRVRLPSL PVPYMRTPRV 60 PTANARARPK ISRPLFAAKQ NPPPAAGLVS GGLACCSFHP ARYIYRPSPL LLASTASPSG 120 QIPGGPRLDH PPTPRSTIAS ACHLTPGLSP AGTLAVHADR RPPHITVCRF DPKPINAPPP 180 RPSPPISSSG SRPRKVPSHA VAMNRDRANA PEYPTSSASM EALLEPKLED EAALPLSSPG 240 PLVPLDQLMP GPGLDPPRPL EALLQGPQLP PFLSKTFDLV SEPALDGVIS WGAAGNSIVV 300 WDPSTFARDV LPYHFKHNNF STFVRQLNTY SRGVDPVTGK LNPCHGMPRS SSLDPEHTLR 360 REKTALLQEV TRLKQEHRQT IEHMSTLNQR LESADDRQKQ MISFLAKLLQ NPTFVRQLKL 420 QREQKEIDST RVKRKYLKHV PHGSIESGLD ATSSEAACLA SLGENMGLLS GTMLEPAAND 480 EQLWGIDTSA ALQSSCSGSS QQAYSSLASD PYLMEIVNKP EKFWDPDFQP LDEGDLPLDK

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MFTAADATFA TPTKGTEPVR HKTATTTITL GYADVAQRTI QPIRVRLPSL PVPYMRTPRV  60
PTANARARPK ISRPLFAAKQ NPPPAAGLVS GGLACCSFHP ARYIYRPSPL LLASTASPSG  120
QIPGGPRLDH PPTPRSTIAS ACHLTPGLSP AGTLAVHADR RPPHITVCRF DPKPINAPPP  180
RPSPPISSSG SRPRKVPSHA VAMNRDRANA PEYPTSSASM EALLEPKLED EAALPLSSPG  240
PLVPLDQLMP GPGLDPPRPL EALLQGPQLP PFLSKTFDLV SEPALDGVIS WGAAGNSIVV  300
WDPSTFARDV LPYHFKHNNF STFVRQLNTY SRGVDPVTGK LNPCHGMPRS SSLDPEHTLR  360
REKTALLQEV TRLKQEHRQT IEHMSTLNQR LESADDRQKQ MISFLAKLLQ NPTFVRQLKL  420
QREQKEIDST RVKRKYLKHV PHGSIESGLD ATSSEAACLA SLGENMGLLS GTMLEPAAND  480
EQLWGIDTSA ALQSSCSGSS QQAYSSLASD PYLMEIVNKP EKFWDPDFQP LDEGDLPLDK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-15	264	330	11	78	Heat shock factor protein 1
5hdg_A	9e-16	269	330	7	68	Heat shock factor protein 1
5hdn_A	9e-16	269	330	7	68	Heat shock factor protein 1
5hdn_B	9e-16	269	330	7	68	Heat shock factor protein 1
5hdn_C	9e-16	269	330	7	68	Heat shock factor protein 1
5hdn_D	9e-16	269	330	7	68	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813039.1	1e-109	heat stress transcription factor A-3-like
Swissprot	Q6H6Q7	1e-100	HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBL	A0A3L6QHX9	1e-110	A0A3L6QHX9_PANMI; Heat stress transcription factor A-3-like
STRING	Pavir.Ab01320.1.p	1e-104	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9010	30	41

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744] Mittal D,Madhyastha DA,Grover A Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually. Plant Sci., 2012. 197: p. 102-13 [PMID:23116677]