PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07492.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 182aa    MW: 20324.9 Da    PI: 6.8735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07492.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-0899145448
                                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                                     WT +E  +lvd+v+ lG g+W+   +t      Rt+ ++k++w+++l
  Zmw_sc07492.1.g00010.1.sm.mkhc  99 WTLDEVNQLVDGVATLGVGRWTELKSTYFptSIRTAQHLKDKWRNLL 145
                                     ************************887766989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.03E-1294146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-998145IPR009057Homeodomain-like
PfamPF002496.2E-699145IPR001005SANT/Myb domain
PROSITE profilePS500907.73599145IPR017877Myb-like domain
CDDcd116602.06E-1699145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
SSLPECKRET EAGGFHSDAE AADKLELLCD VCSNEDLLES ASDECKKVEA CSCSGDHESK  60
GNSITKSLRG RGKRSTSWGI EMRRQFGLRR ATRTNNYHWT LDEVNQLVDG VATLGVGRWT  120
ELKSTYFPTS IRTAQHLKDK WRNLLIACGL QVGRKKKNEL NASLVCVQQV EDFLLCSEEL  180
IA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B6QKK79e-23A0A1B6QKK7_SORBI; Uncharacterized protein
STRINGSb01g020800.11e-23(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134