PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07504.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 234aa MW: 24924.2 Da PI: 10.1911

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07504.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.2	4.1e-34	29	86	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ Zmw_sc07504.1.g00030.1.am.mk 29 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSLQDAAVVITTYEGKHTHP 86 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-35	13	88	IPR003657	WRKY domain
SuperFamily	SSF118290	1.27E-29	20	88	IPR003657	WRKY domain
PROSITE profile	PS50811	31.835	23	88	IPR003657	WRKY domain
SMART	SM00774	3.9E-40	28	87	IPR003657	WRKY domain
Pfam	PF03106	4.4E-27	29	86	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
AAKGKGEGEK RPRQPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTTQKCP 60 VKKRVERSLQ DAAVVITTYE GKHTHPIPAT LRGSTHLLAG HHPHFHLPPP VGGAGFAYGR 120 PCATAFDALG LLQPQPQQHH AIQQLVSGGA GCAAAGVQPQ RVNAGAMASR HAAADQLGLA 180 SIVGTVAGGA ASATTAATSS TVPLRMQHFM AQDYAGLLQD MLPSFIQNDG GNNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-28	19	89	8	78	Probable WRKY transcription factor 4
2lex_A	4e-28	19	89	8	78	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961203.1	2e-84	probable WRKY transcription factor 28
TrEMBL	A0A1E5VKW3	4e-97	A0A1E5VKW3_9POAL; Putative WRKY transcription factor 71
STRING	Si022220m	7e-84	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173