PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07545.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MIKC_MADS

Protein Properties

Length: 241aa MW: 26751.1 Da PI: 8.1181

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07545.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.2	1.1e-28	91	141	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrng lKKA E+SvLCdaev v+ifss gkly+++s Zmw_sc07545.1.g00020.1.am.mk 91 KRIENSTNRQVTFSKRRNGFLKKAREISVLCDAEVGVVIFSSAGKLYDFCS 141 79***********************************************96 PP
2	K-box	51.4	4.6e-18	144	198	17	71
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 + e++ +kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k ++ Zmw_sc07545.1.g00020.1.am.mk 144 TSAEIDHVKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLRNLNDKLHQ 198 678*********************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.969	83	143	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-41	83	142	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.67E-30	84	153	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.07E-43	84	160	No hit	No description
PRINTS	PR00404	6.0E-30	85	105	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.9E-25	92	139	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-30	105	120	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-30	120	141	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	9.787	141	241	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.1E-11	144	196	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
LTQNLPALPF PARTSEQTRK PPGGHSSSCH GDPFYSSLTS TAPPNHITPA PPTEQFQAQA 60 PFREGKKRPG SPASGSEPAA GRMGRGKIEI KRIENSTNRQ VTFSKRRNGF LKKAREISVL 120 CDAEVGVVIF SSAGKLYDFC SPKTSAEIDH VKKENDNMQI ELRHLKGEDL NSLQPKELIM 180 IEEALDNGLR NLNDKLHQQD IALSGSMRDL ELGYHADRDF EAQMPITFRV QPSHPNLQEN 240 N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
5f28_C	2e-17	83	142	1	60	MEF2C
5f28_D	2e-17	83	142	1	60	MEF2C
6byy_A	1e-17	83	142	1	60	MEF2 CHIMERA
6byy_B	1e-17	83	142	1	60	MEF2 CHIMERA
6byy_C	1e-17	83	142	1	60	MEF2 CHIMERA
6byy_D	1e-17	83	142	1	60	MEF2 CHIMERA
6bz1_A	1e-17	83	142	1	60	MEF2 CHIMERA
6bz1_B	1e-17	83	142	1	60	MEF2 CHIMERA
6bz1_C	1e-17	83	142	1	60	MEF2 CHIMERA
6bz1_D	1e-17	83	142	1	60	MEF2 CHIMERA
6c9l_A	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	1e-17	83	142	1	60	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816957.1	3e-97	MADS-box transcription factor 2
Swissprot	Q40702	1e-97	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	A0A2T7DDM5	1e-105	A0A2T7DDM5_9POAL; Uncharacterized protein
STRING	Si002929m	2e-96	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3434	38	77

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]