PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07581.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 190aa MW: 20598 Da PI: 10.3467

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07581.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24	7e-08	46	98	6	53
HHHHHHHHHHHHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas.....kapskKlsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ s +++s+ + + Le A +YI++ Zmw_sc07581.1.g00040.1.am.mk 46 KTVERNRRNQMNALYSRLDTLVRDGSapeaeRGGSPATTRPDRLETAAHYIRQ 98 679******************95559999999999************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.8E-8	45	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.71E-7	45	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-5	47	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MVYYYPTRKR TPTPVSWPEM AMQPPPPPPF GNPAAGGGGG FKPDRKTVER NRRNQMNALY 60 SRLDTLVRDG SAPEAERGGS PATTRPDRLE TAAHYIRQTA ERVERLRERK RELTSASSTQ 120 LGSGSSARAA EVEVQHLGSG LHAILVTGAP PSDGTSFHRA VRAVEEAGGE VQNAHFSVVG 180 ARAIYTIHTL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954617.2	1e-72	transcription factor bHLH162
TrEMBL	K3Z116	2e-71	K3Z116_SETIT; Uncharacterized protein
STRING	Si020234m	4e-72	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11987	29	38