PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07644.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 207aa MW: 22939.9 Da PI: 9.2831

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07644.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.7e-11	159	206	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W E+e l ++v+++G+g+Wk I + + gRt+ ++k++w++ + Zmw_sc07644.1.g00010.1.am.mkhc 159 WCLLEEETLRKGVEEYGSGNWKDILANNPdvfIGRTPVDLKDKWRNMM 206 66669****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-13	150	207	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.404	151	207	IPR017930	Myb domain
SuperFamily	SSF46689	8.22E-15	153	206	IPR009057	Homeodomain-like
SMART	SM00717	0.0029	155	207	IPR001005	SANT/Myb domain
CDD	cd11660	1.43E-18	157	207	No hit	No description
Pfam	PF00249	1.1E-9	158	205	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
AGQEKVHEIL SKLEGVSSHV NKVSTPEVRK VIDALQTSCA DLRRSAEDPL SAAKAAADAV 60 LAARMDKAHN LNAASVNGQQ ATCGTAGPSS HNDVDKAPNK GAPSLMDWNP TAQTYQWEDS 120 PDTERPQFCR PHLPSPRRMP VSPLQPPINK NKRRKARKWC LLEEETLRKG VEEYGSGNWK 180 DILANNPDVF IGRTPVDLKD KWRNMMR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00052	PBM	Transfer from AT1G15720	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811007.1	2e-99	uncharacterized protein LOC112888859
TrEMBL	A0A2T7E254	6e-99	A0A2T7E254_9POAL; Uncharacterized protein
STRING	Pavir.J08903.1.p	4e-99	(Panicum virgatum)
STRING	Si006005m	3e-95	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3154	30	40