PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07678.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 184aa MW: 20016.8 Da PI: 9.3326

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07678.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.8	6.1e-32	6	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvi 80 aCa+Ck++rrkC+++C la yfpa+++k+f+++h +FG++n++kl+ka +e r++a+++l++eA +r rdP +G+++ + Zmw_sc07678.1.g00020.1.sm.mk 6 ACAVCKHQRRKCEPNCELAAYFPANRMKDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEAGWRERDPSEGCYREV 86 7********************************************9977766*********************** PP DUF260 81 lklqqqleqlkaelallkee 100 l+++ + l+ae a+l+++ Zmw_sc07678.1.g00020.1.sm.mk 87 AGLRRENALLRAENAALRRQ 106 ***********9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.336	5	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-29	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MTGVGACAVC KHQRRKCEPN CELAAYFPAN RMKDFRALHL VFGVANLTKL IKANATEAAR 60 RRAAETLTWE AGWRERDPSE GCYREVAGLR RENALLRAEN AALRRQCAAA FSTYGGGASV 120 ANSNVVGGCY NGNGTAQTMF VGYAQDDRGY LCPAADVRNS VGMERSDAAI TMIMGDKNKK 180 ILKQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-16	2	99	6	103	LOB family transfactor Ramosa2.1
5ly0_B	8e-16	2	99	6	103	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314390.1	3e-63	LOB domain-containing protein 7
TrEMBL	A0A1E5VAI4	3e-62	A0A1E5VAI4_9POAL; Uncharacterized protein
STRING	BRADI2G08480.1	1e-62	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13044	28	33