PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07698.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 450aa MW: 46455.8 Da PI: 9.0937

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07698.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	63	124	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Zmw_sc07698.1.g00020.1.am.mk 63 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 124 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	61	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	65	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MEEMLMAGNP NPNQNQNPAP AAPSAPPGGA QRAGVPAASA AAPAAGAGTA AGAGTERRAR 60 PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK 120 RSSSSVSVAA ATTSAAMSGT VPVGVGLAAA KNPKLMHEGA QDLNLAFPHH NGRGLQPPEF 180 AAFPSLESSS VCNPAGAAMA GTGAGGRGVG AFSAMELLRS TGYYVPLQHM QLGMPAEYTS 240 AGFALGELRM PPPPQSQSVL GFSLDTHGTG GVGGPGAYSA ALQDSAAGRL LFPFEDLKPA 300 VSAAGGGVSN TVGDHQYEHS KDQGGDGRAA SGVTGGHQTP GFWNNSMIGN ASSNGSGGGP 360 WIYECDERRQ RCSGQDERAV VMHVPVRTTV MYSGEQLGAC NQEQRRRFFT VSQPHSCPAD 420 TAIPADPGPG SGKARPQRRV VIQPPAAALF

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MEEMLMAGNP NPNQNQNPAP AAPSAPPGGA QRAGVPAASA AAPAAGAGTA AGAGTERRAR  60
PQKEKALNCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK  120
RSSSSVSVAA ATTSAAMSGT VPVGVGLAAA KNPKLMHEGA QDLNLAFPHH NGRGLQPPEF  180
AAFPSLESSS VCNPAGAAMA GTGAGGRGVG AFSAMELLRS TGYYVPLQHM QLGMPAEYTS  240
AGFALGELRM PPPPQSQSVL GFSLDTHGTG GVGGPGAYSA ALQDSAAGRL LFPFEDLKPA  300
VSAAGGGVSN TVGDHQYEHS KDQGGDGRAA SGVTGGHQTP GFWNNSMIGN ASSNGSGGGP  360
WIYECDERRQ RCSGQDERAV VMHVPVRTTV MYSGEQLGAC NQEQRRRFFT VSQPHSCPAD  420
TAIPADPGPG SGKARPQRRV VIQPPAAALF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826521.1	1e-154	dof zinc finger protein 2-like isoform X2
Swissprot	B9F1L8	1e-121	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A3L6QBV6	1e-154	A0A3L6QBV6_PANMI; Uncharacterized protein
STRING	Sb04g032040.1	1e-148	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]