PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07703.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 489aa MW: 53074.8 Da PI: 8.662

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07703.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.6	1.5e-13	164	245	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessst 78 W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g+++ s +qCk++++ l+k+yk +++ + + + Zmw_sc07703.1.g00020.1.am.mk 164 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYSKapkSDVQCKNRIDTLKKKYKVERAKQVS-------S 237 ***********************************87788876222667************99887775.......5 PP trihelix 79 cpyfdqle 86 +++fd+l+ Zmw_sc07703.1.g00020.1.am.mk 238 WQFFDRLD 245 99999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.2E-23	162	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010468	Biological Process	regulation of gene expression
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MGGTWKPIFL PAVRRVGIQA QPADLTHPVA GPSFRPGPSQ RAPRCRILPP PSESTSPPTP 60 PAPPHHRTQR PDLNRIRSPS PPPIHPIRPD PLAMDDDDDV SGSASPSPDS SPAASALPVA 120 DPVTVAAAPP GGAFALALPI QRTAASLYPT SGGGGGGGGR EDAWSEGATS ALIDAWGERF 180 VALGRGSLRH PQWQEVADAV SSRDGYSKAP KSDVQCKNRI DTLKKKYKVE RAKQVSSWQF 240 FDRLDVLLAP TYGQKPAAAG QKHVPNGRNP VHTALRVGFP HPQRSRMPLM PSAVKRREPS 300 PEPSASLESS DGFPPPALPV ANGKRRRTDE DHGDGDSDHE RAQGLRELSM VIRRLGEAYE 360 RVETAKLEQA METERQRMEF ARELESQRVQ FFLNAQMDLT QSKNQSSPAA ATIPSSAKTV 420 GGGSRRMSTA ADVGGSSNHH DRYRKSHGDR HRHAPRQHYR YHDSHHAASV AANEGEQTDE 480 EEDEEEESQ

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MGGTWKPIFL PAVRRVGIQA QPADLTHPVA GPSFRPGPSQ RAPRCRILPP PSESTSPPTP  60
PAPPHHRTQR PDLNRIRSPS PPPIHPIRPD PLAMDDDDDV SGSASPSPDS SPAASALPVA  120
DPVTVAAAPP GGAFALALPI QRTAASLYPT SGGGGGGGGR EDAWSEGATS ALIDAWGERF  180
VALGRGSLRH PQWQEVADAV SSRDGYSKAP KSDVQCKNRI DTLKKKYKVE RAKQVSSWQF  240
FDRLDVLLAP TYGQKPAAAG QKHVPNGRNP VHTALRVGFP HPQRSRMPLM PSAVKRREPS  300
PEPSASLESS DGFPPPALPV ANGKRRRTDE DHGDGDSDHE RAQGLRELSM VIRRLGEAYE  360
RVETAKLEQA METERQRMEF ARELESQRVQ FFLNAQMDLT QSKNQSSPAA ATIPSSAKTV  420
GGGSRRMSTA ADVGGSSNHH DRYRKSHGDR HRHAPRQHYR YHDSHHAASV AANEGEQTDE  480
EEDEEEESQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197552.1	1e-169	trihelix transcription factor ASIL2-like
Swissprot	Q9LJG8	2e-37	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	F2CYX6	1e-169	F2CYX6_HORVV; Predicted protein
STRING	Traes_2BL_0C45635DD1.4	1e-166	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2404	30	69