PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08088.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 560aa MW: 61212.6 Da PI: 8.689

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08088.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.8e-07	188	238	1	40
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqc 40 r rW+teE+ +++da + +Wk+I + + ++t+ q+ Zmw_sc08088.1.g00020.1.am.mk 188 RERWSTEEHGRFLDALLIVERDeqiavaffrfgrDWKKIEEQVR-TKTAVQV 238 78****************99******************.**998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-5	182	240	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.4E-4	185	213	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.4E-4	269	298	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
MWRTGRPRTE TCACCVTSSF EAVARVVLPK LPVCRNSQTT RPVRIRTQPG THALLSPREP 60 ADFPEPERTV AISFFPHMFF SRLTDDTSLS DATRSQSHHH QPVGWRAQAT SYDAATRLRP 120 APHLHFNSWL NCRRSIRVRV ACYISASVLG EDGICTSATR LTMDGGGSNH ETPGGKKARK 180 PYTITKPRER WSTEEHGRFL DALLIVERDE QIAVAFFRFG RDWKKIEEQV RTKTAVQVTS 240 SSCSISIRAF ALFGGRIPQV QNELIEMQSS CSSLVVTFAS TCVQIRSHAQ KYFIKVQKLG 300 LAAGLPPQYP RRRFVMHQQQ QQGSTSTAGS SAAAVPVLQG QPHGAPVAVP MPGPSCDGVV 360 VHGSLGWDCA GILPSTAGGK HLCSATVYFL INAPGTSAWV NTDGHGQIAP PASLIGTPSF 420 SDATVDWAGS SSSKPLASGD AQDEFIQLPL SPDDLNFARV YRFVGDMFDP NTVCQVDSHL 480 QRLKGMDDIT VKTILLVLRN LETNLSAPQF EPVVSSSTPL VSHPCVHPEY QSGMRQVVLP 540 LEQYRHFVQA LGKFDAAGLA

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

MWRTGRPRTE TCACCVTSSF EAVARVVLPK LPVCRNSQTT RPVRIRTQPG THALLSPREP  60
ADFPEPERTV AISFFPHMFF SRLTDDTSLS DATRSQSHHH QPVGWRAQAT SYDAATRLRP  120
APHLHFNSWL NCRRSIRVRV ACYISASVLG EDGICTSATR LTMDGGGSNH ETPGGKKARK  180
PYTITKPRER WSTEEHGRFL DALLIVERDE QIAVAFFRFG RDWKKIEEQV RTKTAVQVTS  240
SSCSISIRAF ALFGGRIPQV QNELIEMQSS CSSLVVTFAS TCVQIRSHAQ KYFIKVQKLG  300
LAAGLPPQYP RRRFVMHQQQ QQGSTSTAGS SAAAVPVLQG QPHGAPVAVP MPGPSCDGVV  360
VHGSLGWDCA GILPSTAGGK HLCSATVYFL INAPGTSAWV NTDGHGQIAP PASLIGTPSF  420
SDATVDWAGS SSSKPLASGD AQDEFIQLPL SPDDLNFARV YRFVGDMFDP NTVCQVDSHL  480
QRLKGMDDIT VKTILLVLRN LETNLSAPQF EPVVSSSTPL VSHPCVHPEY QSGMRQVVLP  540
LEQYRHFVQA LGKFDAAGLA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819438.1	1e-104	protein REVEILLE 8-like isoform X1
TrEMBL	A0A2T7DRB8	1e-110	A0A2T7DRB8_9POAL; Uncharacterized protein
STRING	ORGLA01G0032300.1	4e-90	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3642	31	70