PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08102.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 154aa MW: 16863.1 Da PI: 8.8445

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08102.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	42.7	2e-13	5	38	3	36
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvt 36 ++ e+vCyv+CnfC+t+lavsvP +s+++vvt Zmw_sc08102.1.g00010.1.sm.mkhc 5 TVAPVEHVCYVHCNFCSTVLAVSVPGNSVLTVVT 38 566789***************************9 PP
2	YABBY	33.1	1.9e-10	66	106	94	134
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134 ++ + ++ + +++ ++++ + r PekrqrvPsaynrfi Zmw_sc08102.1.g00010.1.sm.mkhc 66 AKFRLPTMYSAQNDLLQEQALAARAPEKRQRVPSAYNRFIN 106 33444444444444455555689****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-10	9	38	IPR006780	YABBY protein
Pfam	PF04690	9.9E-9	64	105	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MSAQTVAPVE HVCYVHCNFC STVLAVSVPG NSVLTVVTEN IRPQGIINGT SRDQFDHLEF 60 GSSSSAKFRL PTMYSAQNDL LQEQALAARA PEKRQRVPSA YNRFINIASR LWAHYPNIHF 120 GLSSPGREGG KKLVDETVAA VTTPAPTNKI QGFY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804908.1	4e-57	protein YABBY 6-like isoform X2
Swissprot	Q2QM17	6e-45	YAB6_ORYSJ; Protein YABBY 6
TrEMBL	A0A0A8Y151	2e-60	A0A0A8Y151_ARUDO; Uncharacterized protein
STRING	Sb08g022030.1	3e-56	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121