PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08148.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 217aa MW: 23964.8 Da PI: 6.1008

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08148.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.1	4e-20	86	171	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fYneYA+++GF r+ +s++sk ++ + +v ++eg ++++ + + +++r+r++ r gC+a+++v +e +++w+v+ Zmw_sc08148.1.g00010.1.sm.mk 86 EFYNEYARRLGFPFRVGRSRRSKGTE----EVLVMKREGMYKKKQPSsdDATRKRERVSMRDGCNAMMEVVRE-SDHWVVS 161 6*******************6666....55666677665555544335689999***********99.9** PP FAR1 80 kleleHnHel 89 kle+ HnH l Zmw_sc08148.1.g00010.1.sm.mk 162 KLEKAHNHGL 171 ******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-17	86	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MIMEGARSEG DELIADYVDC LMSLDTSARS HQNDSIVLGD SIVEGAPSLS VGGAAEPEVM 60 KDFALGDDPN EPVLGMVFES DEAAKEFYNE YARRLGFPFR VGRSRRSKGT EEVLVMKREG 120 MYKKKQPSSD DATRKRERVS MRDGCNAMME VVRESDHWVV SKLEKAHNHG LGTCTKEADS 180 NPGHSGHKSR HSFHKIAGSS LNIRNSPPIM AATDKDF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020193510.1	2e-89	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020193511.1	2e-89	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020193512.1	2e-89	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453JX23	7e-90	A0A453JX23_AEGTS; Uncharacterized protein
STRING	Traes_5DS_61EE28B2A.2	9e-89	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967