PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08236.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 843aa MW: 89680 Da PI: 9.9459

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08236.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.9	0.0002	441	463	33	55
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 + s++ +Ka++L ++++Y+k+Lq Zmw_sc08236.1.g00010.1.am.mk 441 NESERTDKASMLDEVIDYLKQLQ 463 57899*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.3E-4	441	469	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-5	441	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
YMWHVEGLST DRAAWHAAKF WELYQGPEQK YARPPCAKAA ASVQKSSPET APARPMMATG 60 IGKGGSAVMW KPRRLRARLR LTSPGPLAAS PPSVPSLSLP PPPPIRTPAC AIERAISNRS 120 MVTSRAHPSV LKCPRPPRVP RPRNGTSTRA LLVHTLACRA RPSLPAHAGV VPPSATSHAI 180 GRGGGVEMNQ CVPSWDLDDP AAGSVPINKV SAAAGAYHRA AVAGAGDSLS PLVVPMSDQY 240 YEGSISSHGL LNRPTPKYPP AAPSHQLQAI GGGGDGGSGD HETLEAVVGE AATRSHFPQP 300 SFPATPWLGV GVPLHADALV PCARDEQAAG EETPRKRARV VGDGGLVCTS QGSVASGRRG 360 ESAMHALDAA CGTDVCGFTT MTNNSTSLDR EENKGSPDTE NTSIGGGANG LCDEGENVVN 420 DELAMRSSIS TKRSRAAAIH NESERTDKAS MLDEVIDYLK QLQAQAQVQV MSRMSSMMMP 480 MAMPQLQMSV MAQMAQMAQM AQMAQGMMNM GSLAQPGYVP PPMMHSPPPF VPLPWDTGAT 540 GASSGAGAVG DHAARPXXFA TFLACQQAQQ NGQQQSGSME AYNRMLAMCQ KLNQQQYQCQ 600 PSSSKQGRNA HSSAAAPIRH PDSGGDHARD DDESSEPARI KSRASWSSRR DTWPAAIGAV 660 TEMERETETL AAAHMPRNAG RQLDPRIKRR EARQRRGQAD TGGRKRRVGK KPDVMVSANK 720 PLPEEMGRAF GRTPLSKDAG LQLCNALFDW RLSPGRGRLA SERQRHSEKL AVARTTDNVV 780 GTAKVVRPAA HQYSVAKNEH ARAAAPKKAS FVSCVTLPDN AVSGVRPGAV MWPVGNFHLH 840 GHF

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

YMWHVEGLST DRAAWHAAKF WELYQGPEQK YARPPCAKAA ASVQKSSPET APARPMMATG  60
IGKGGSAVMW KPRRLRARLR LTSPGPLAAS PPSVPSLSLP PPPPIRTPAC AIERAISNRS  120
MVTSRAHPSV LKCPRPPRVP RPRNGTSTRA LLVHTLACRA RPSLPAHAGV VPPSATSHAI  180
GRGGGVEMNQ CVPSWDLDDP AAGSVPINKV SAAAGAYHRA AVAGAGDSLS PLVVPMSDQY  240
YEGSISSHGL LNRPTPKYPP AAPSHQLQAI GGGGDGGSGD HETLEAVVGE AATRSHFPQP  300
SFPATPWLGV GVPLHADALV PCARDEQAAG EETPRKRARV VGDGGLVCTS QGSVASGRRG  360
ESAMHALDAA CGTDVCGFTT MTNNSTSLDR EENKGSPDTE NTSIGGGANG LCDEGENVVN  420
DELAMRSSIS TKRSRAAAIH NESERTDKAS MLDEVIDYLK QLQAQAQVQV MSRMSSMMMP  480
MAMPQLQMSV MAQMAQMAQM AQMAQGMMNM GSLAQPGYVP PPMMHSPPPF VPLPWDTGAT  540
GASSGAGAVG DHAARPXXFA TFLACQQAQQ NGQQQSGSME AYNRMLAMCQ KLNQQQYQCQ  600
PSSSKQGRNA HSSAAAPIRH PDSGGDHARD DDESSEPARI KSRASWSSRR DTWPAAIGAV  660
TEMERETETL AAAHMPRNAG RQLDPRIKRR EARQRRGQAD TGGRKRRVGK KPDVMVSANK  720
PLPEEMGRAF GRTPLSKDAG LQLCNALFDW RLSPGRGRLA SERQRHSEKL AVARTTDNVV  780
GTAKVVRPAA HQYSVAKNEH ARAAAPKKAS FVSCVTLPDN AVSGVRPGAV MWPVGNFHLH  840
GHF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	687	706	KRREARQRRGQADTGGRKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	OPUNC10G16560.1	1e-100	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7474	31	40