PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08244.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 233aa MW: 25874.5 Da PI: 9.6281

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08244.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.2e-10	70	116	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE+ RRdr+N++f+eL +l + + +K +K++iL A++ + Zmw_sc08244.1.g00010.1.am.mkhc 70 TKACREKLRRDRLNERFNELCAILEPG---KPPKADKVAILNDATRLLGR 116 5678********************9...99**********987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.509	66	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-12	69	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-7	70	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.63E-6	70	122	No hit	No description
SMART	SM00353	2.1E-6	72	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-11	73	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
VEEEIQGSEF IYMVDDPAVS SVMLGFDAPR KVDGVQDNSV PKKRQNLLAS FPSKWQTYQS 60 RPESSAPPGT KACREKLRRD RLNERFNELC AILEPGKPPK ADKVAILNDA TRLLGRLRAE 120 AQKLQKSNEA LQDSIKSLKA EKSELRDEKT RLKSERERLE QMLKGVSGAA APVQFLPHPA 180 AAATPPPFHP AAFAHAGKFV PYANYPSPAA FWQWIPPTSL DTTKDPAHWP PVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003568328.1	1e-119	transcription factor ILR3
TrEMBL	A0A0A9MRF0	1e-119	A0A0A9MRF0_ARUDO; Uncharacterized protein
STRING	Pavir.J06547.1.p	1e-118	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9386	31	36