PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08360.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 274aa MW: 28813.1 Da PI: 10.4245

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08360.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Zmw_sc08360.1.g00030.1.am.mk 74 FTCNYCQRKFFSSQALGGHQNAH 96 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.71E-6	72	101	No hit	No description
PROSITE profile	PS50157	11.323	74	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MNGEEICQAP GDDVSEISSQ AASNSSGRVT LDLSLTVAAA AATTESSTTD NSNGDDTQAG 60 PAAAVAAREP ARVFTCNYCQ RKFFSSQALG GHQNAHRRER TLARRTRRRR TRNRGTSPPP 120 PSSRGARGGC SPRCRSSSAT TSSASAGPGA SGRPPSPPSR RVVISSALSC MPWRSPISRF 180 GSDTIGQFLF DIDRIVTVPL DQTLIVSGVQ EIFLDHGSSE EGSNRQPTGV PIASWSSKLV 240 PLAVNCHRWS PGPGDVLKVR GDGNMLAVGL LAKI

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9847	30	41