PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08386.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 179aa MW: 19948.2 Da PI: 7.0318

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08386.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.3e-06	157	177	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++ +C++G++C+++H+ Zmw_sc08386.1.g00010.1.am.mk 157 VCYAFQK-SECNRGASCRYSHD 177 6999*.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54928	1.85E-6	37	72	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	1.85E-6	102	140	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50103	13.648	152	179	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0026	154	178	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MQRRRNIKAT GGGRGGDESP DAGEADPGDK PEGGVPRHRG GRSWHAKFKD SAYVFTGGIP 60 YDLKEGDLLD AFAQMSACIP LFPSHPLGIA AAGRSYEFLT LSRYGEVVDE NLVRNKDDLN 120 GAKVLGRIIR VDHVSKYKKK EEEDEEELQK KREERGVCYA FQKSECNRGA SCRYSHDEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_Y	3e-16	43	156	27	135	RNA-binding motif protein, X-linked 2
5z57_Y	3e-16	43	156	27	135	RNA-binding motif protein, X-linked 2
5z58_Y	3e-16	43	156	27	135	RNA-binding motif protein, X-linked 2
6ff4_1	3e-16	43	156	27	135	RNA-binding motif protein, X-linked 2
6ff7_1	3e-16	43	156	27	135	RNA-binding motif protein, X-linked 2
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101659.1	5e-46	zinc finger CCCH domain-containing protein 42-like
Refseq	XP_011102209.1	6e-46	zinc finger CCCH domain-containing protein 25-like
Refseq	XP_020547276.1	6e-46	zinc finger CCCH domain-containing protein 25-like
Refseq	XP_020547277.1	6e-46	zinc finger CCCH domain-containing protein 25-like
Refseq	XP_020547278.1	6e-46	zinc finger CCCH domain-containing protein 25-like
Swissprot	Q10B98	2e-41	C3H25_ORYSJ; Zinc finger CCCH domain-containing protein 25
TrEMBL	A0A2G9G357	4e-44	A0A2G9G357_9LAMI; Putative RNA-binding protein (RRM superfamily)
STRING	Migut.N00441.1.p	7e-43	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5918	3	3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]