PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08548.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 241aa    MW: 27079.9 Da    PI: 5.8582
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08548.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.84.3e-1876143359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS....STT....EEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae....dpk....vveitYegeHnhe 59 
                                   Dg +WrKYGqK++++ ++prsYYrCt++   gC+++k v++++e    dp+    + +++Y+g+H+++
  Zmw_sc08548.1.g00020.1.am.mk  76 DGRQWRKYGQKKINKEKHPRSYYRCTYRqeqGCKATKTVQQQDEsagtDPTtaavMYTVVYHGQHTCK 143
                                   999************************98899*******99875222255423335678999***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-2271144IPR003657WRKY domain
SuperFamilySSF1182908.89E-2071144IPR003657WRKY domain
SMARTSM007742.8E-2674144IPR003657WRKY domain
PfamPF031067.0E-2376143IPR003657WRKY domain
PROSITE profilePS5081115.23976116IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MFQDVLDCSS KAMAELQLLH DKSDDDALLV DDKKRVRRIN PNEVDKEDVI KPHQKHNSRR  60
RFADSVPLET PVPHYDGRQW RKYGQKKINK EKHPRSYYRC TYRQEQGCKA TKTVQQQDES  120
AGTDPTTAAV MYTVVYHGQH TCKQGTNGSD SGADGGFETK TTTVLQSSSD DSRSSVSKNC  180
LEHPCSDQLQ SSLDGRNEPI NGSAEFIAEN SMYEAFDMTA ASAFLELDSC WDLDALLRSC  240
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13761431069OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977389.18e-77probable WRKY transcription factor 63
TrEMBLK3Y9722e-75K3Y972_SETIT; Uncharacterized protein
STRINGSi010764m3e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079