PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08574.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family E2F/DP
Protein Properties Length: 104aa    MW: 11770.2 Da    PI: 6.2554
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08574.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP48.41.6e-154482362
                         E2F_TDP 23 givtlnevakeLvse.....dvknkrRRiYDilNVLealnliekk 62
                                    ++++l+e+a+ L+ e     ++++k+RR+YDi+NVL++lnliek 
  Zmw_sc08574.1.g00030.1.sm.mkhc  4 ETISLDEAARLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKL 48
                                    79******************************************3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013729.7E-5159IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.02E-7348IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-10448IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.2E-12448IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEVETISLDE AARLLLGEGH AESNMRTKVR RLYDIANVLS SLNLIEKLGQ GSRSDFVYGP  60
FHPSGAKKQE IGDHSVREER KSIQDWENLA VTFRPQYQNQ VVGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966858.17e-25E2F transcription factor-like E2FE
TrEMBLA0A1E5WGM54e-37A0A1E5WGM5_9POAL; E2F transcription factor-like E2FF
STRINGPavir.Ab02967.1.p4e-30(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884