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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc08734.1.g00010.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 213aa MW: 22770.5 Da PI: 7.6974 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 23.8 | 8.4e-08 | 3 | 31 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
L+el+P++ K +Ka++L +A+eY+ksLq
Zmw_sc08734.1.g00010.1.am.mk 3 ALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 31
69******8.....6******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 12.074 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 6.1E-11 | 1 | 38 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 9.68E-11 | 2 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.41E-7 | 3 | 35 | No hit | No description |
| Pfam | PF00010 | 4.7E-5 | 3 | 31 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 213 aa Download sequence Send to blast |
MRALQELIPH CNKTDKASML DEAIEYLKSL QLQVQMMWMG SGVTAPPVMF PGVHKYLPRM 60 GVRMGAAAAA AMPRMPFMAP QLVNPVPLSP GYLGHMPAVG ITEPYAHYLG TVNHLQPTLT 120 QHFAQGVDYY PLGTKAVQQN PALHVPGAGG SMTAAAPGVL PPESAPNKGP GTTPSCSSLL 180 SYRRPNNKGQ PIIPWVPPES ADDLTLLSPE DMV |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004982350.1 | 1e-83 | transcription factor PIF1 isoform X1 | ||||
| TrEMBL | A0A368SH29 | 3e-82 | A0A368SH29_SETIT; Uncharacterized protein | ||||
| STRING | Pavir.Ia01219.1.p | 2e-83 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3107 | 36 | 77 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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