PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08768.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 222aa    MW: 23959 Da    PI: 4.4832
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08768.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-091965445
                                    S-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
                 Myb_DNA-binding  4 WTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                                    WT e ++ + +av+    +      +W++Ia+ +  g+t+++++ ++ 
  Zmw_sc08768.1.g00010.1.sm.mkhc 19 WTREQEKAFENAVATVAEDdtdgdaRWEKIAELVE-GKTAEEVRRHYE 65
                                    *****************99****************.**********96 PP
2Myb_DNA-binding41.14.2e-13128172347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  Zmw_sc08768.1.g00010.1.sm.mkhc 128 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 172
                                     7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.4651472IPR017884SANT domain
SMARTSM007174.1E-61570IPR001005SANT/Myb domain
SuperFamilySSF466892.08E-101874IPR009057Homeodomain-like
CDDcd001676.09E-71968No hitNo description
PfamPF002493.6E-71965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-41965IPR009057Homeodomain-like
PROSITE profilePS5129417.671121177IPR017930Myb domain
SuperFamilySSF466891.2E-16123178IPR009057Homeodomain-like
SMARTSM007171.0E-11125175IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.1E-17125175IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.5E-11126171IPR009057Homeodomain-like
PfamPF002491.2E-11128172IPR001005SANT/Myb domain
CDDcd001675.38E-9128173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAVEEATSSG EEGGGGAGWT REQEKAFENA VATVAEDDTD GDARWEKIAE LVEGKTAEEV  60
RRHYELLVED VDGIEAGRVP LPTYAGDDEG GGGSGGGWSG KKGSGGGGGG GEKGSAKSAE  120
QERRKGVAWT EDEHRLFLLG LEKYGKGDWR SISRNFVISR TPTQVASHAQ KYFIRLNSMN  180
RERRRQSIHD ITSVNNGDAS AAQGPITDWE EDDDCTSMVL MY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-171484673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448771.11e-103transcription factor SRM1
SwissprotQ9FNN69e-81SRM1_ARATH; Transcription factor SRM1
TrEMBLC5YAI21e-102C5YAI2_SORBI; Uncharacterized protein
STRINGSb06g032880.11e-103(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]