PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08836.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 227aa    MW: 25151.7 Da    PI: 10.6348
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08836.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19151199153
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                                   ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  +
  Zmw_sc08836.1.g00010.1.am.mk 151 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 199
                                   59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.67E-32151210No hitNo description
SMARTSM003809.7E-39152215IPR001471AP2/ERF domain
PfamPF008478.4E-12152196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-33152209IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-20152210IPR016177DNA-binding domain
PROSITE profilePS5103221.878152209IPR001471AP2/ERF domain
PRINTSPR003671.4E-10153164IPR001471AP2/ERF domain
PRINTSPR003671.4E-10175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDLILGSLHG LTAQDGQPPP RPACTFHGRA APAFTAKDPS EQLQQQKVPS AKNSLTHVSE  60
WSRAVKLRSW FGSLRARLQP SSNIINEVAK GVGEGVYYQC PGSRGWLCHP LQFTDSAADP  120
THLLPIFVPP VFPPHHTKIP EQRISMVQSK KKFRGVRQRH WGSWVSEIRH PLLKRRVWLG  180
TFETAEEAAR AYDEAAVLMS GRNAKTNFPV PRSATGELAP VPAARDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-15151217470ATERF1
3gcc_A1e-15151217470ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118