PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08845.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 586aa MW: 62106.2 Da PI: 9.5337

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08845.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119	1.8e-37	357	414	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Zmw_sc08845.1.g00020.1.am.mk 357 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 414 579***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	29.385	358	412	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	358	412	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	359	407	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	360	396	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MDAYLTLLSL ASKHATVALS RDETEEGSLS LPNSHRQQHA PPPPKLIGRR CDGLGLRAKP 60 AAQLRAAPAH GAPSPWTSRG RLSALAHSFV SPIRRRFLLF ALATIFDCAG GNSVGLPRRT 120 VAEEEEEEAS ARRRDALLLT LKPLVLSCRF GDSSAGTHSL LPVRPRQAVV APNRRPFVVR 180 SISPYVDERA SSRRREMAPR VGGTMPHLAF ALFRLCDVYK YGAAGERGPS PSLDSSSPRL 240 HPSRSPVTSI RRCELEPSGA IALALVAPSI CGEFVSSFSF YLDLALLVSS SSSGTCSCLF 300 TASVAMVFSS LPIFLDPPSW GQVQQQQQPL QCLLGGGSDH QHLMPPPSGL APLPPGTLRC 360 PRCDSTNTKF CYFNNYSLSQ PRHFCKACRR YWTRGGALRN VPVGGGCRRN TKRSSKKSSR 420 QGGVAAAGGA TAASSSSSTT STSTTATTTT TSSAAAAEVL ASMQAQLPQF GLPPAAAAAA 480 LEASLEGYQY HHYLPLQMQQ QFLQQGLQGY HFADGDSGGV FADGFPRGVA SGLLAQLAAV 540 KMEEHNNGGA VAAHEQSYWP SSGGGGNGWP TEFLPGFSSS SSGNVV

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MDAYLTLLSL ASKHATVALS RDETEEGSLS LPNSHRQQHA PPPPKLIGRR CDGLGLRAKP  60
AAQLRAAPAH GAPSPWTSRG RLSALAHSFV SPIRRRFLLF ALATIFDCAG GNSVGLPRRT  120
VAEEEEEEAS ARRRDALLLT LKPLVLSCRF GDSSAGTHSL LPVRPRQAVV APNRRPFVVR  180
SISPYVDERA SSRRREMAPR VGGTMPHLAF ALFRLCDVYK YGAAGERGPS PSLDSSSPRL  240
HPSRSPVTSI RRCELEPSGA IALALVAPSI CGEFVSSFSF YLDLALLVSS SSSGTCSCLF  300
TASVAMVFSS LPIFLDPPSW GQVQQQQQPL QCLLGGGSDH QHLMPPPSGL APLPPGTLRC  360
PRCDSTNTKF CYFNNYSLSQ PRHFCKACRR YWTRGGALRN VPVGGGCRRN TKRSSKKSSR  420
QGGVAAAGGA TAASSSSSTT STSTTATTTT TSSAAAAEVL ASMQAQLPQF GLPPAAAAAA  480
LEASLEGYQY HHYLPLQMQQ QFLQQGLQGY HFADGDSGGV FADGFPRGVA SGLLAQLAAV  540
KMEEHNNGGA VAAHEQSYWP SSGGGGNGWP TEFLPGFSSS SSGNVV