PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08918.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 388aa MW: 43497.7 Da PI: 9.9818

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08918.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.5	1.1e-13	25	76	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q+++Le+++ +yp+ +e+ + A+ +gLt +qV++WF+ rR ke++ Zmw_sc08918.1.g00010.1.am.mkhc 25 KKSPLQIQRLEKFYTDVQYPKPAEMVQYAAFVGLTYNQVRIWFKERRRKERR 76 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.2E-13	19	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.42E-13	23	78	IPR009057	Homeodomain-like
CDD	cd00086	1.01E-8	24	67	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-13	24	80	IPR009057	Homeodomain-like
Pfam	PF00046	4.7E-11	25	76	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.54	30	77	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDVPSAADMT MVTSLGAIRA NGGTKKSPLQ IQRLEKFYTD VQYPKPAEMV QYAAFVGLTY 60 NQVRIWFKER RRKERREMET VGAHTERQLS SRASGPSSTS SCTQAPMSES SSISIGEEPT 120 VRPQALFPKD YILRKIFRKD GPPLGSEFDP LPQSALANIR DVTSHHSSQN QRVVKKRKAM 180 EYSNQRSKKP NEVTVPVRKH GIGKGLMTVW HAMYSHNVEC QGHSSFIDET GCLRSLRPFD 240 ECDGFEGQDN GKRTQMKSQN KGMARKKVDK RSKAPLNKRK VPCSRVFVPE QHSILDCHLS 300 VDVSESSEVQ TEHVALVDDE ELELSELQSG PNPLQCSAHL SSSGRHGCPL CKDLLAKFPP 360 RSVKMKQALS MKPWGSSPNM VKKLFQVI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDVPSAADMT MVTSLGAIRA NGGTKKSPLQ IQRLEKFYTD VQYPKPAEMV QYAAFVGLTY  60
NQVRIWFKER RRKERREMET VGAHTERQLS SRASGPSSTS SCTQAPMSES SSISIGEEPT  120
VRPQALFPKD YILRKIFRKD GPPLGSEFDP LPQSALANIR DVTSHHSSQN QRVVKKRKAM  180
EYSNQRSKKP NEVTVPVRKH GIGKGLMTVW HAMYSHNVEC QGHSSFIDET GCLRSLRPFD  240
ECDGFEGQDN GKRTQMKSQN KGMARKKVDK RSKAPLNKRK VPCSRVFVPE QHSILDCHLS  300
VDVSESSEVQ TEHVALVDDE ELELSELQSG PNPLQCSAHL SSSGRHGCPL CKDLLAKFPP  360
RSVKMKQALS MKPWGSSPNM VKKLFQVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	76	RRRKERRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793779.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_025793780.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A2S3ISD5	1e-179	A0A2S3ISD5_9POAL; Uncharacterized protein
TrEMBL	A0A2S3ITF1	1e-179	A0A2S3ITF1_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CF07	1e-179	A0A2T7CF07_9POAL; Uncharacterized protein
TrEMBL	A0A2T7CF08	1e-179	A0A2T7CF08_9POAL; Uncharacterized protein
STRING	Pavir.Ib01030.1.p	1e-174	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50