PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08932.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 100aa MW: 11041.6 Da PI: 10.1394

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08932.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	122.5	6.2e-38	3	56	117	170
YABBY 117 rPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 r PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl Zmw_sc08932.1.g00030.1.am.mk 3 RAPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 56 89**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.8E-36	2	56	IPR006780	YABBY protein
SuperFamily	SSF47095	6.68E-8	3	50	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.0E-5	5	48	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MYRAPEKRQR VPSAYNRFIK DEIQRIKAGN PDITHREAFS AAAKNWAHFP HIHFGLMPDQ 60 GLKKTFKTQD GAEDMLLKDG LYAAAAAAAA AAVNTGVTPF

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452852.1	1e-56	protein YABBY 4
Swissprot	A2X7Q3	2e-55	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	2e-55	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A3L6QIB7	1e-55	A0A3L6QIB7_PANMI; Uncharacterized protein
STRING	Sb04g033590.1	4e-56	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]