PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc09148.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 177aa    MW: 20143.9 Da    PI: 10.4408
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc09148.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-13143347
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                    +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Zmw_sc09148.1.g00010.1.sm.mkhc  1 SWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 43
                                    5*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.96E-8144No hitNo description
SMARTSM007173.6E-7146IPR001005SANT/Myb domain
PROSITE profilePS5129416.952148IPR017930Myb domain
PfamPF002494.2E-11143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-6139IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-17146IPR006447Myb domain, plants
SuperFamilySSF466895.53E-15249IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
SWTEQEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA QKYFLKVQKN GTSEHVPPPR  60
PKRKAARPYP QKASKNESHA LKPDSSSIHR NSGLNATVSS WTHNSVRPVI ASPVVKVMPD  120
FTQKLKEMNP IDVETALLLM RNLSINLTSP NFEDQRKLLS LYSSSDDLSW GAPRVQV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953451.12e-91protein REVEILLE 6 isoform X3
SwissprotQ8H0W33e-64RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0A9BME34e-93A0A0A9BME3_ARUDO; Uncharacterized protein
STRINGPavir.Ab02700.1.p8e-91(Panicum virgatum)
STRINGOPUNC02G25660.19e-91(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]