PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc09150.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 170aa    MW: 18877.1 Da    PI: 6.6267
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc09150.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY110.48.4e-3570128159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Zmw_sc09150.1.g00020.1.am.mkhc  70 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 128
                                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-3955130IPR003657WRKY domain
SuperFamilySSF1182906.15E-3162130IPR003657WRKY domain
PROSITE profilePS5081138.29765130IPR003657WRKY domain
SMARTSM007746.5E-4070129IPR003657WRKY domain
PfamPF031061.6E-2771128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MIEPVPGPAS DDDIDVGGGR PYPVDDANED DDLDSKRRKM ESAGIDAALM GKPNREPRVV  60
VQTVSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHTG CPVRKHVERA SHDPKSVITT  120
YEGKHNHEVP ASKTASHEMS TAPMKTAVHT INSNMPGLGV AWDFQECQYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-3961131878Probable WRKY transcription factor 4
2lex_A8e-3961131878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695163.11e-99PREDICTED: WRKY transcription factor SUSIBA2-like
SwissprotQ6VWJ69e-96WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A0B5GUL98e-98A0A0B5GUL9_9POAL; WRKY17 transcription factor (Fragment)
TrEMBLJ3MMF62e-98J3MMF6_ORYBR; Uncharacterized protein
STRINGOB07G25880.14e-99(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851