PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc09295.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 194aa MW: 21638.3 Da PI: 8.0935

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc09295.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.5e-12	126	171	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l+P+ +k + a++L +Ave+I+ Lq Zmw_sc09295.1.g00010.1.sm.mkhc 126 SIAERERRTRISDKLRKLQALVPNM----DKQTTTADMLDLAVEHIRGLQ 171 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.062	120	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-16	123	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.48E-12	124	175	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-14	125	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-12	126	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-9	126	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MKSPMNLPRQ GTLAQISEDG IPNLTEKMHA IRHSEENITA SNVARSFSGG FSIGSWEDSN 60 SIAFSNPSSK DGVNNNDDFM ATLSNYELQF GVAKEASGVD KYLQMQNDQI PFRVRAKRGC 120 ATHPRSIAER ERRTRISDKL RKLQALVPNM DKQTTTADML DLAVEHIRGL QSELQVLKEE 180 MEKCSCRGKH PSGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825346.1	1e-114	transcription factor bHLH129-like
TrEMBL	A0A2S3I7V0	1e-113	A0A2S3I7V0_9POAL; Uncharacterized protein
STRING	Pavir.Gb01377.1.p	1e-109	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14188	20	26