PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc09382.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 353aa MW: 38399.9 Da PI: 9.9821

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc09382.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	30	52	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F ++ L+ H + H Zmw_sc09382.1.g00010.1.am.mk 30 TCHRCGERFGKWEALEAHHLSkH 52 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	31	52	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.26E-22	54	274	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.3E-10	78	243	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
SVISAHRASC EETASKSGGG NSKGSGGGPT CHRCGERFGK WEALEAHHLS KHAVTELMEG 60 DSSRKIVEII CRTSLLKSES SCVRIERVFK VHNTQRTLSR FEEHREAVKL KASKLAKKHP 120 RCLADGNELL RFHGSTIACA LGGAGGSSSS LCASDKCAVC RIIRHGFVSS KKEAGAVGVF 180 TTSTSGRAFE SIDAPADDDL ATTRKALLVC RVIAGRVHRP LDNLREIAGQ TGFDSLAGKV 240 GPYSNIEELY LLNPRALLPC FVVVCKPTLT PTVRWNQPRF SVYRPNLSAS QKSLQSADNK 300 EWSLLVFPRP QPVAPVVGGS RWLVAVSARQ QHPEPSWSPW YQLSLSPPVR PRL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

SVISAHRASC EETASKSGGG NSKGSGGGPT CHRCGERFGK WEALEAHHLS KHAVTELMEG  60
DSSRKIVEII CRTSLLKSES SCVRIERVFK VHNTQRTLSR FEEHREAVKL KASKLAKKHP  120
RCLADGNELL RFHGSTIACA LGGAGGSSSS LCASDKCAVC RIIRHGFVSS KKEAGAVGVF  180
TTSTSGRAFE SIDAPADDDL ATTRKALLVC RVIAGRVHRP LDNLREIAGQ TGFDSLAGKV  240
GPYSNIEELY LLNPRALLPC FVVVCKPTLT PTVRWNQPRF SVYRPNLSAS QKSLQSADNK  300
EWSLLVFPRP QPVAPVVGGS RWLVAVSARQ QHPEPSWSPW YQLSLSPPVR PRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458613.1	1e-150	uncharacterized protein LOC8054725
Refseq	XP_006644817.1	1e-150	PREDICTED: uncharacterized protein LOC102701492
TrEMBL	B9ETN9	1e-151	B9ETN9_ORYSJ; Uncharacterized protein
STRING	OB01G42280.1	1e-149	(Oryza brachyantha)
STRING	Sb03g036720.1	1e-149	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3277	28	41