PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc09537.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CAMTA

Protein Properties

Length: 68aa MW: 8253.4 Da PI: 10.1332

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc09537.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	116.7	1.2e-36	1	68	37	104
CG-1 37 gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLee 104 g+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e++p+f rrcywlL++ Zmw_sc09537.1.g00010.1.am.mkhc 1 GTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEDDPNFFRRCYWLLDK 68 789***************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	4.8E-16	1	68	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.9E-29	1	68	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	50.912	1	68	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
GTVVLYDRKV VRNFRKDGHN WKKKKDGKTV QEAHEKLKIG NEEKVHVYYA RGEDDPNFFR 60 RCYWLLDK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269\|PubMed:16192280}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001352474.1	9e-43	uncharacterized protein LOC100502366
Swissprot	Q7XHR2	2e-43	CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBL	A0A1D6IBR1	3e-42	A0A1D6IBR1_MAIZE; Calmodulin-binding transcription activator 5
STRING	Pavir.J11066.1.p	1e-42	(Panicum virgatum)
STRING	Sb02g033620.1	4e-42	(Sorghum bicolor)
STRING	GRMZM2G032336_P01	3e-42	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19838	3	4