PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc09667.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 160aa    MW: 16862.2 Da    PI: 4.3155
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc09667.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.7e-091965445
                                  S-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                                  WT e ++ + +av+    +      +W++Ia+ +  ++t+++++ ++ 
  Zmw_sc09667.1.g00010.1.am.mk 19 WTREQEKAFENAVATVAEDdtdgdaRWEKIAELVE-RKTAEEVRRHYE 65
                                  *****************99****************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-51570IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-101874IPR009057Homeodomain-like
PROSITE profilePS500906.7251968IPR017877Myb-like domain
CDDcd001671.36E-61968No hitNo description
Gene3DG3DSA:1.10.10.605.1E-41965IPR009057Homeodomain-like
PfamPF002497.5E-71965IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAVEEATSSG EEGGGGAGWT REQEKAFENA VATVAEDDTD GDARWEKIAE LVERKTAEEV  60
RRHYELLVED VDGIEAGRVP LPTYAGDDEG GGGSGGGWSG KKGSGGGGGG GEKGSAKSAE  120
QERRKGVAWT EDEHRFASPH FLSSDLLKLE MSYRVPESGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-161484673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448771.11e-45transcription factor SRM1
SwissprotQ9FNN63e-28SRM1_ARATH; Transcription factor SRM1
TrEMBLC5YAI23e-44C5YAI2_SORBI; Uncharacterized protein
STRINGSb06g032880.14e-45(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]