PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc10127.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 618aa MW: 69035.8 Da PI: 7.1663

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc10127.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.8	1.6e-10	2	44	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Zmw_sc10127.1.g00010.1.am.mk 2 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 44 6***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.614	1	48	IPR017930	Myb domain
SMART	SM00717	1.4E-8	1	46	IPR001005	SANT/Myb domain
CDD	cd11659	2.29E-27	1	47	No hit	No description
SuperFamily	SSF46689	3.21E-11	2	49	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-10	2	45	IPR009057	Homeodomain-like
Pfam	PF13921	1.8E-9	3	51	No hit	No description
Pfam	PF11831	6.7E-51	347	553	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
TEWTREEDEK LLHLAKLMPT QWRTIAPIVG RTPSQCLERY EKLLDAACAK DENYEPNDDP 60 RKLRPGEIDP NPESKPARPD PVDMDEDEKE MLSEARARLA NTRGKKAKRK AREKQLEEAR 120 RLASLQKRRE LKAAGIDTRK RNRKRKGIDY NAEIPFEKRP PPGFYDTFGE DKPPEHVQFP 180 TTIEDLEGKR RVDIETQLRK QDIARNKILQ RQDAPAAIMQ ANKLNDPEAV TKRSKLMLPP 240 PQISDHELEE IAKMGSAGDP SLVEEIGEGS TATRALLSSY SQTPRLGMTP LRTPHRTPAG 300 KGDAIMMEAE NLARLRESQT PLLGGDNPDL HPSDFSGVTP RKREIQTPNP MATPLASPGP 360 GATPQIGMTP SRDGNSFGLT PKVTPFRDEL RINEEVDMQD SAKLELRRQA ELRKSLRSGF 420 SSIPQPKNEY QIVMPPITED EKEEAEEKIE EDMSDRLARQ RAEEQARQEA LLRKRSKVLQ 480 RSLPRPPAAS VEVLRQSLIK GGESRNRSTF VPPTLLEQAD DLISEELLRL LEHDNAKYPL 540 DEKSQKEKKK GNKRQANGAM FVPEIEDFDE GRAPGGVTDA WRQGGRGVGA AAAGIWEGRR 600 GGADELAAGS GRGGAAGI

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

TEWTREEDEK LLHLAKLMPT QWRTIAPIVG RTPSQCLERY EKLLDAACAK DENYEPNDDP  60
RKLRPGEIDP NPESKPARPD PVDMDEDEKE MLSEARARLA NTRGKKAKRK AREKQLEEAR  120
RLASLQKRRE LKAAGIDTRK RNRKRKGIDY NAEIPFEKRP PPGFYDTFGE DKPPEHVQFP  180
TTIEDLEGKR RVDIETQLRK QDIARNKILQ RQDAPAAIMQ ANKLNDPEAV TKRSKLMLPP  240
PQISDHELEE IAKMGSAGDP SLVEEIGEGS TATRALLSSY SQTPRLGMTP LRTPHRTPAG  300
KGDAIMMEAE NLARLRESQT PLLGGDNPDL HPSDFSGVTP RKREIQTPNP MATPLASPGP  360
GATPQIGMTP SRDGNSFGLT PKVTPFRDEL RINEEVDMQD SAKLELRRQA ELRKSLRSGF  420
SSIPQPKNEY QIVMPPITED EKEEAEEKIE EDMSDRLARQ RAEEQARQEA LLRKRSKVLQ  480
RSLPRPPAAS VEVLRQSLIK GGESRNRSTF VPPTLLEQAD DLISEELLRL LEHDNAKYPL  540
DEKSQKEKKK GNKRQANGAM FVPEIEDFDE GRAPGGVTDA WRQGGRGVGA AAAGIWEGRR  600
GGADELAAGS GRGGAAGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
5xjc_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
5yzg_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
5z56_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
5z57_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
5z58_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
6ff4_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
6ff7_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
6icz_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
6id0_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
6id1_L	1e-145	1	549	61	601	Cell division cycle 5-like protein
6qdv_O	1e-145	1	549	61	601	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	145	KRRELKAAGIDTRKRNRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004975336.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	K3Y4Y0	0.0	K3Y4Y0_SETIT; Uncharacterized protein
STRING	Pavir.Ga02351.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4416	35	53

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]