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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc10237.1.g00010.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 175aa MW: 18311.4 Da PI: 7.0207 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 103 | 2e-32 | 76 | 129 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
+vrY+eClkNhAa++Gg a+DGCgEfmp+ geeg+ +al+C+ACgCHRnFHR+e+
Zmw_sc10237.1.g00010.1.am.mk 76 GVRYRECLKNHAAAIGGSATDGCGEFMPA-GEEGSLDALRCSACGCHRNFHRKEP 129
68**************************9.999********************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04770 | 2.0E-29 | 77 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 2.3E-30 | 78 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| ProDom | PD125774 | 2.0E-22 | 78 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 27.682 | 79 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 175 aa Download sequence Send to blast |
MDFSGTQSEL PMPMGAGGPP YLGLQALHHA HEQQHNHGAN GRHMSPPQVE VEEEEDAKNR 60 QALAVVPVST GGGGGGVRYR ECLKNHAAAI GGSATDGCGE FMPAGEEGSL DALRCSACGC 120 HRNFHRKEPL GAGDGVPNRA LHHHHQLGLG GGPLHHPHPH HRGLLVAALP PAPTR |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Putative transcription factor. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001144285.1 | 2e-62 | uncharacterized protein LOC100277167 | ||||
| Refseq | XP_020405218.1 | 2e-62 | uncharacterized LOC100277167 isoform X1 | ||||
| Refseq | XP_020405219.1 | 2e-62 | uncharacterized LOC100277167 isoform X1 | ||||
| Swissprot | Q2QW44 | 2e-33 | ZHD3_ORYSJ; Zinc-finger homeodomain protein 3 | ||||
| TrEMBL | A0A1D6MY51 | 2e-61 | A0A1D6MY51_MAIZE; Zinc-finger homeodomain protein 4 | ||||
| STRING | GRMZM5G821755_P01 | 7e-62 | (Zea mays) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP24828 | 2 | 3 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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