PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc10424.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 99aa    MW: 11065.5 Da    PI: 10.1949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc10424.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-096497132
                                  TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmg 32
                                  +g+WT+eEd  lv+ ++++Gg+  +W+  ++  g
  Zmw_sc10424.1.g00010.1.am.mk 64 KGPWTEEEDRTLVEHIQKHGGHvsSWRNLPKAAG 97
                                  79*******************9999998887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.61E-95494IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-105695IPR009057Homeodomain-like
PROSITE profilePS5129413.9915999IPR017930Myb domain
PfamPF002494.4E-76495IPR001005SANT/Myb domain
CDDcd001672.70E-46694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MQRSITSVLL RYKSRYEPRA TYTSNPSIPA ASPSPSREKR ACRKTSIESM GRSPCCCHDA  60
GVKKGPWTEE EDRTLVEHIQ KHGGHVSSWR NLPKAAGLN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105856.16e-29transcription factor MYB2
SwissprotQ8GWP06e-13MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A1E5WJI74e-28A0A1E5WJI7_9POAL; Transcription factor MYB39
TrEMBLA0A3L6Q4P14e-28A0A3L6Q4P1_PANMI; Transcription factor MYB39
TrEMBLQ8S4153e-28Q8S415_MAIZE; P-type R2R3 Myb protein
STRINGGRMZM2G081557_P012e-29(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955