PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc10520.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 112aa    MW: 12395 Da    PI: 10.2045
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc10520.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.46.8e-2097956128
                           NAM  56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk.gektdWvmheyrl 128
                                    ewyfF++++++   ++ +nrat sgyW+    +   +++++e +g+kktLvfy+g +pk + kt+W+m eyrl
  Zmw_sc10520.1.g00010.1.am.mk   9 AEWYFFCPTEST---STSSNRATGSGYWQVISANAIRKHATSEIIGIKKTLVFYRGPTPKsSIKTHWIMSEYRL 79 
                                   59******9875...5789**********998876666669999************6655156*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.1171105IPR003441NAC domain
SuperFamilySSF1019419.55E-201084IPR003441NAC domain
PfamPF023652.1E-141179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MAMSSLALAE WYFFCPTEST STSSNRATGS GYWQVISANA IRKHATSEII GIKKTLVFYR  60
GPTPKSSIKT HWIMSEYRLA DDTFRSISNS VKGSSSHAST QVRASLQSTM YV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-14109172154NO APICAL MERISTEM PROTEIN
1ut4_B3e-14109172154NO APICAL MERISTEM PROTEIN
1ut7_A3e-14109172154NO APICAL MERISTEM PROTEIN
1ut7_B3e-14109172154NO APICAL MERISTEM PROTEIN
3swm_A3e-14109175157NAC domain-containing protein 19
3swm_B3e-14109175157NAC domain-containing protein 19
3swm_C3e-14109175157NAC domain-containing protein 19
3swm_D3e-14109175157NAC domain-containing protein 19
3swp_A3e-14109175157NAC domain-containing protein 19
3swp_B3e-14109175157NAC domain-containing protein 19
3swp_C3e-14109175157NAC domain-containing protein 19
3swp_D3e-14109175157NAC domain-containing protein 19
4dul_A3e-14109172154NAC domain-containing protein 19
4dul_B3e-14109172154NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3S3NV451e-16A0A3S3NV45_9MAGN; NAC domain-containing protein 68-like protein
STRINGVIT_15s0048g02270.t012e-16(Vitis vinifera)
STRINGEMT022417e-17(Aegilops tauschii)
STRINGTraes_4DL_F0BE36C9D.12e-16(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3569034