PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc10556.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 352aa MW: 37917.7 Da PI: 9.554

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc10556.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Zmw_sc10556.1.g00010.1.am.mk 19 YVCEICGQGFQRDQNLQMHRRRH 41 9*********************9 PP
2	zf-C2H2	12.2	0.00055	98	119	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ Zmw_sc10556.1.g00010.1.am.mk 98 ACARCSKAYAVHSDYKAHLKTC 119 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.16E-6	18	41	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	18	41	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0032	19	41	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.635	19	41	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	21	41	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	61	91	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.7E-4	88	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.16E-6	92	117	No hit	No description
SMART	SM00355	230	97	124	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
PDAEVVSLSP RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR DAGEGARKRV 60 FVCPEPSCLH HDPAHALGDL VGIKKHFRRK HSGHRQWACA RCSKAYAVHS DYKAHLKTCG 120 TRGHTCDCGR VFSRYGAVRS CYNRLPYHLL GERDDDEREG KGRDRHNFRG QLHQARLRLA 180 LAAAPFNGVN QPDGLKTDAP ACLTWIAKSL IASLFSSLAD IKSRIVVSDR PAAWKAGSPN 240 PSAIALHCLL PTEEVISADI SSTPTHASLV ESFIEHQDTC NSSRPARADA ASSSPASGGG 300 GGGRLGAAAV AASSSPQAPQ GRQVHVALSR TASSASPSSG GDLVVSPVAW PG

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

PDAEVVSLSP RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR DAGEGARKRV  60
FVCPEPSCLH HDPAHALGDL VGIKKHFRRK HSGHRQWACA RCSKAYAVHS DYKAHLKTCG  120
TRGHTCDCGR VFSRYGAVRS CYNRLPYHLL GERDDDEREG KGRDRHNFRG QLHQARLRLA  180
LAAAPFNGVN QPDGLKTDAP ACLTWIAKSL IASLFSSLAD IKSRIVVSDR PAAWKAGSPN  240
PSAIALHCLL PTEEVISADI SSTPTHASLV ESFIEHQDTC NSSRPARADA ASSSPASGGG  300
GGGRLGAAAV AASSSPQAPQ GRQVHVALSR TASSASPSSG GDLVVSPVAW PG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-13	93	134	3	44	Zinc finger protein JACKDAW
5b3h_F	7e-13	93	134	3	44	Zinc finger protein JACKDAW

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124