PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc10776.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 62aa MW: 6382.39 Da PI: 9.0464

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc10776.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	49.3	1.4e-15	28	62	1	35
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhk 35 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk Zmw_sc10776.1.g00010.1.sm.mk 28 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHK 62 7*********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.66	27	62	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-14	28	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MASPSSTSNS AMSPVAAPGT TTPGAGAPCA ACKFLRRKCL PGCVFAPYFP PEEPQKFANV 60 HK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-25	21	62	4	45	LOB family transfactor Ramosa2.1
5ly0_B	2e-25	21	62	4	45	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818403.1	4e-34	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_025818404.1	4e-34	protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	5e-19	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2S3HY84	9e-33	A0A2S3HY84_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DRP8	9e-33	A0A2T7DRP8_9POAL; Uncharacterized protein
TrEMBL	A0A3L6SKA6	9e-33	A0A3L6SKA6_PANMI; LOB domain-containing protein 4-like
STRING	Pavir.J38993.1.p	5e-33	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8813	35	45

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]