PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc12461.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 157aa MW: 16550.6 Da PI: 6.3549

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc12461.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.3	6.9e-31	63	130	6	73
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 rh ++hTkv+gR+RR+Rl caar+ L++eLG++ d++t+ WLlqq++pa++++tgt++ +a ++ Zmw_sc12461.1.g00010.1.am.mk 63 PRHRDRHTKVEGRGRRIRLAEACAARIARLTRELGHKNDGETVRWLLQQSEPAVIAATGTGTVPAIAT 130 69**********************************************************77777333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.4E-25	65	132	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.52	65	119	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MGEEDVAAIY HAAGNGTAVT DEAVVGIDAM GSSEAHGSLM PKPEPAPMEF LGELQVANPR 60 PAPRHRDRHT KVEGRGRRIR LAEACAARIA RLTRELGHKN DGETVRWLLQ QSEPAVIAAT 120 GTGTVPAIAT TVDGVLRLPS SPPAAVADGD QQPDPKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803340.1	5e-64	transcription factor PCF2-like
Swissprot	A2YXQ1	1e-46	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-46	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A3L6QPY7	3e-65	A0A3L6QPY7_PANMI; Transcription factor PCF2-like
STRING	Si030591m	2e-61	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]