PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc13598.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 121aa MW: 13154.8 Da PI: 8.7673

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc13598.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C + F ++ L H++ H Zmw_sc13598.1.g00010.1.sm.mk 87 FACHYCRRQFYSSQALGGHQNAH 109 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.71E-6	85	114	No hit	No description
PROSITE profile	PS50157	11.136	87	114	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MEVDQVGKEG RREKRLIGGG NGHRGQLDAA KVELDLLGGM VGSVVDFRPA AVRDVADQSS 60 SLPVLLDLVP PDQPPSTAAG LDPPQLFACH YCRRQFYSSQ ALGGHQNAHK RERTLARRRG 120 E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799127.1	6e-24	uncharacterized protein LOC112879022
TrEMBL	A0A1D6H2L8	2e-29	A0A1D6H2L8_MAIZE; Zinc finger protein 2
STRING	GRMZM2G417574_P01	1e-21	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274