PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma101g00200.1
Common NameZOSMA_101G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family YABBY
Protein Properties Length: 259aa    MW: 28197.7 Da    PI: 8.3914
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma101g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY204.34.6e-63192085170
             YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee........................lle 73 
                       s seq+Cyv+Cn C+t+lavsvP++slfk+vtvrCGhC++llsvn++  + + +       ++ ++                           
  Zosma101g00200.1  19 SPSEQLCYVHCNICDTVLAVSVPYSSLFKTVTVRCGHCSNLLSVNMRALHMQPPPPPPNPLNFANNtaffqtnlleeittcsapspaaasAPS 111
                       689********************************************9996665554434444444456777777789999999987664444 PP

             YABBY  74 elkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
                          v+    +s + +++++st ++++  s+ +++ +++   v++PPekrqrvPsaynrfik+eiqrika+nP+i+hreafsaaaknWa+fP+i
  Zosma101g00200.1 112 ASSVAPAPPSSFDNHQHQTSTAKETTLRSRRSEDFIQQSLSVNKPPEKRQRVPSAYNRFIKDEIQRIKAGNPEITHREAFSAAAKNWAYFPHI 204
                       44555555566666777777766665557777777888889**************************************************** PP

             YABBY 167 hfgl 170
                       hfgl
  Zosma101g00200.1 205 HFGL 208
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.0E-6620208IPR006780YABBY protein
SuperFamilySSF470953.67E-7154201IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.4E-4155200IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSSSLTTSTL SLETHLTSSP SEQLCYVHCN ICDTVLAVSV PYSSLFKTVT VRCGHCSNLL  60
SVNMRALHMQ PPPPPPNPLN FANNTAFFQT NLLEEITTCS APSPAAASAP SASSVAPAPP  120
SSFDNHQHQT STAKETTLRS RRSEDFIQQS LSVNKPPEKR QRVPSAYNRF IKDEIQRIKA  180
GNPEITHREA FSAAAKNWAY FPHIHFGLMP DHQGGGLKKN NNNIRHKVKD DATADHDVML  240
KDGLYVTAAS ANMGVTPF*
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787013.14e-80protein YABBY 4-like
RefseqXP_010919475.24e-80protein YABBY 4
SwissprotA2X7Q31e-68YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-68YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A0K9Q5840.0A0A0K9Q584_ZOSMR; Protein YABBY 4
STRINGXP_008787013.11e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-63YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]