PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma101g00280.1
Common NameZOSMA_101G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 373aa    MW: 40973.4 Da    PI: 8.6446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma101g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05828323
                      ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                      C++Cgk F r  nL+ H r H
  Zosma101g00280.1  8 CEICGKGFQRDQNLQLHRRGH 28
                      *******************88 PP
2zf-C2H210.80.001682104123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +   s+ k H +t+
  Zosma101g00280.1  82 WKCDKCSKKYAVMSDWKAHSKTC 104
                       58*****************9998 PP
3zf-C2H211.50.00093112130523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg+ Fsrk+++++H   +
  Zosma101g00280.1 112 DCGTIFSRKDSFVTHRAFC 130
                       8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.489628IPR007087Zinc finger, C2H2
SuperFamilySSF576671.28E-7628No hitNo description
SMARTSM003550.076628IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-5628IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551804777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-777102No hitNo description
SMARTSM0035520082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MATNKFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRSTK DMKKKVYVCP EKSCVHHDPC  60
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVMSDWKAH SKTCGTREYK CDCGTIFSRK  120
DSFVTHRAFC DALTEEHMRL SSTFATAISA GDIDSHNHTQ VNQHMCLSNM YVHDQKSADL  180
SLWLNRQVDA PDVPPALFNP IAIPERTTGV DLLPTGSSLG YASEMLDIKD CSTFAPSLYS  240
SGNNNSSGSV VHMSATALLQ KAAQMGTGVS NPSSSMFAGI GALMSSSVDK TLNHQSSSTR  300
TGGNMGMRLG EMPMGWNING VDGSLTRDFL GLGGDDQNSS CRPLFSPQEL AKIASMENDM  360
DLITSPYNGN RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3678142367Zinc finger protein JACKDAW
5b3h_F5e-3678142367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021611087.11e-108protein indeterminate-domain 9-like
SwissprotQ9SCQ64e-96IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A0K9Q5I00.0A0A0K9Q5I0_ZOSMR; Zinc finger family protein
STRINGcassava4.1_007089m1e-108(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.15e-85indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]