PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma101g00420.1
Common NameZOSMA_101G00420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 99aa    MW: 10984.2 Da    PI: 8.4545
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma101g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.27.3e-104181143
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkree 43
                      +fY +Y  ++GFsvrks+++++ +ng it+rt+vCske k++ 
  Zosma101g00420.1 41 NFYYRYVGRIGFSVRKSTTSSN-TNG-ITRRTLVCSKEVKNNA 81
                      6***************987766.555.***********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-74185IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MKIVMESSTQ DNTDLDLQQS ITSDDHPSTD MSFNTLVDAE NFYYRYVGRI GFSVRKSTTS  60
SNTNGITRRT LVCSKEVKNN AIIPSTTSSL KKTEYSKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q5891e-64A0A0K9Q589_ZOSMR; Uncharacterized protein