PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma101g00780.1

Common Name

ZOSMA_101G00780

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

G2-like

Protein Properties

Length: 244aa MW: 27978.3 Da PI: 8.9336

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma101g00780.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.5e-33	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerFv+a++qLGG+e+ tPk +l++m+v+gLt++hvkSHLQkYRl Zosma101g00780.1 52 RQRLRWTHELHERFVDAIAQLGGPERSTPKGVLRVMDVQGLTIYHVKSHLQKYRL 106 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.888	49	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-31	50	107	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.04E-16	51	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.5E-24	53	107	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-8	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-21	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MNQSKVELVS SSSNNNNGTK IQEHGLEKSG SSVVSFNGRR NAITINKPLS SRQRLRWTHE 60 LHERFVDAIA QLGGPERSTP KGVLRVMDVQ GLTIYHVKSH LQKYRLSKYL SVPESSPDGP 120 KAENRDLSDF DYPSMQITES LKLQMEVEKR LHEQLEVQKQ LQLRIEAQGR YLKRIIDQQQ 180 RRNMVIEENP SNIDDARFQP FQQCENSEDL MIQSGSHPGT PEHEKQIKRQ KDDGYVKQES 240 NSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-23	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-23	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-23	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-23	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-23	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-23	52	109	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-23	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-23	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-23	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-23	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-23	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-23	52	109	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006586674.1	3e-72	MYB-CC domain-containing transcription factor PHR14 isoform X2
Refseq	XP_028179994.1	3e-72	myb family transcription factor PHL7-like isoform X2
Refseq	XP_028758559.1	3e-72	myb family transcription factor PHL7 isoform X1
Refseq	XP_028758560.1	3e-72	myb family transcription factor PHL7 isoform X1
Refseq	XP_028758561.1	3e-72	myb family transcription factor PHL7 isoform X1
Refseq	XP_028758562.1	3e-72	myb family transcription factor PHL7 isoform X1
Refseq	XP_028758563.1	3e-72	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	4e-66	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A0K9Q5L9	1e-179	A0A0K9Q5L9_ZOSMR; MYB transcription factor
STRING	XP_002525238.1	3e-70	(Ricinus communis)
STRING	Migut.M01479.1.p	2e-70	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-68	G2-like family protein

Link Out ? help Back to Top
Phytozome	Zosma101g00780.1